Index B | C | D | E | F | G | I | L | M | O | P | R | S | T | V B BFXPipeline (class in bionty) bionty module BioSample (class in bionty) C CellLine (class in bionty) CellMarker (class in bionty) CellType (class in bionty) D DevelopmentalStage (class in bionty) df() (bionty.BFXPipeline method) (bionty.Organism method) (bionty.PublicOntology method) diff() (bionty.PublicOntology method) Disease (class in bionty) display_available_sources() (in module bionty) display_currently_used_sources() (in module bionty) Drug (class in bionty) E Ethnicity (class in bionty) ExperimentalFactor (class in bionty) F fields (bionty.BFXPipeline attribute) (bionty.BioSample attribute) (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Drug attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.PublicOntology attribute) (bionty.Tissue attribute) G Gene (class in bionty) get_term() (bionty.Ontology method) I inspect() (bionty.PublicOntology method) L lookup() (bionty.PublicOntology method) M map_legacy_ids() (bionty.Gene method) map_synonyms() (bionty.PublicOntology method) module bionty O Ontology (class in bionty) organism (bionty.BFXPipeline attribute) (bionty.BioSample attribute) (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Drug attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.PublicOntology attribute) (bionty.Tissue attribute) Organism (class in bionty) P Pathway (class in bionty) Phenotype (class in bionty) Protein (class in bionty) PublicOntology (class in bionty) PublicOntologyField (class in bionty) R reset_sources() (in module bionty) S search() (bionty.PublicOntology method) settings (in module bionty) source (bionty.BFXPipeline attribute) (bionty.BioSample attribute) (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Drug attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.PublicOntology attribute) (bionty.Tissue attribute) standardize() (bionty.PublicOntology method) T Tissue (class in bionty) to_df() (bionty.Ontology method) to_pronto() (bionty.ExperimentalFactor method) (bionty.PublicOntology method) V validate() (bionty.PublicOntology method) version (bionty.BFXPipeline attribute) (bionty.BioSample attribute) (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Drug attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.PublicOntology attribute) (bionty.Tissue attribute)